PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1023s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 239aa    MW: 26925 Da    PI: 10.2514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1023s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-1784172185
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+l +sdv+ ++r++lpkk ae+h    ++k  e++ ++++d++g   W++k+++  +++s++yv++ +  +Fv a+gL++gD ++ +
  Kalax.1023s0009.1.p  84 FRKILQKSDVSYLRRIILPKKAAEAHlpvlQIK--EGIPIKIYDLDGrHIWTFKYRFwpNNSSRMYVFE-NAGDFVAAHGLQAGDCFIMY 170
                          889*************************76555..66779999****678*****99888888889999.9****************999 PP

                          E- CS
                   B3  84 ld 85 
                          ld
  Kalax.1023s0009.1.p 171 LD 172
                          76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-2379180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2182172IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-2682184No hitNo description
SMARTSM010191.5E-1784186IPR003340B3 DNA binding domain
PfamPF023622.4E-1484180IPR003340B3 DNA binding domain
PROSITE profilePS508639.34784186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
AASRFRVVTR RRADRARRRR SNLSSTYAFS NLTAASNNQH VAPYSVAVAV AVAPPPPPPS  60
SPKPPPFRLT PLYDIDRTNL RFLFRKILQK SDVSYLRRII LPKKAAEAHL PVLQIKEGIP  120
IKIYDLDGRH IWTFKYRFWP NNSSRMYVFE NAGDFVAAHG LQAGDCFIMY LDIVTQNLVI  180
EAKKSEVSDE RKVIIAAESE VKPIRSSAVV PDYILTPPAP EVANPPSDIF INFPPLEDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566799.19e-55B3 domain-containing transcription factor FUS3
SwissprotQ9LW311e-56FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLD7LR962e-52D7LR96_ARALL; Putative uncharacterized protein
STRINGAT3G26790.13e-54(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-54B3 family protein